[Solved] How to use Alignment API to generate a Alignment Format file?

First question: I guess that the “mentioned method” is the one in tutorial1. It is not the appropriate one since you have to write a program to output the alignment format and this is a command line interface tutorial. In this case, you’d better look at http://alignapi.gforge.inria.fr/tutorial/tutorial2/index.html Then, there are basically two ways to do: … Read more